Report date: Nov 6,2024 Conflict count: 361874 Publisher: Cold Spring Harbor Laboratory Title count: 3 Conflict count: 64 ========================================================== Created: 2021-11-18 13:45:33 ConfID: 6366433 CauseID: 1512994566 OtherID: 4371 JT: Genome Research MD: Kato-Maeda,11,4,547,2001,Comparing Genomes within the Species Mycobacterium tuberculosis DOI: 10.1101/gr.166401(Journal) (6366433-N) DOI: 10.1101/gr166401(Journal) ========================================================== Created: 2021-11-18 13:45:51 ConfID: 6366432 CauseID: 1512994598 OtherID: 4371 JT: Genome Research MD: Louis,11,7,1296,2001,Massive Sequence Comparisons as a Help in Annotating Genomic Sequences DOI: 10.1101/gr.GR-1776R(Journal) (6366432-N) DOI: 10.1101/gr.177601(Journal) ========================================================== Created: 2021-11-18 13:45:39 ConfID: 6366435 CauseID: 1512994575 OtherID: 1339351606 JT: Genome Research MD: Zhuo,11,5,904,2001,Assembly, Annotation, and Integration of UNIGENE Clusters into the Human Genome Draft DOI: 10.1101/gr.GR-1645R(Journal) (6366435-N) DOI: 10.1101/gr.164501(Journal) ========================================================== Created: 2021-11-18 13:45:33 ConfID: 6366434 CauseID: 1512994566 OtherID: 4371 JT: Genome Research MD: Younger,11,4,519,2001,Characterization of Clustered MHC-Linked Olfactory Receptor Genes in Human and Mouse DOI: 10.1101/gr.GR-1603R(Journal) (6366434-N) DOI: 10.1101/gr.160301(Journal) ========================================================== Created: 2021-11-18 13:45:39 ConfID: 6366437 CauseID: 1512994575 OtherID: 1339351606 JT: Genome Research MD: Suzuki,11,5,677,2001,Identification and Characterization of the Potential Promoter Regions of 1031 Kinds of Human Genes DOI: 10.1101/gr.GR-1640R(Journal) (6366437-N) DOI: 10.1101/gr.164001(Journal) ========================================================== Created: 2021-11-18 13:45:45 ConfID: 6366436 CauseID: 1512994591 OtherID: 4371 JT: Genome Research MD: Bailey,11,6,1005,2001,Segmental Duplications: Organization and Impact Within the Current Human Genome Project Assembly DOI: 10.1101/gr.GR-1871R(Journal) (6366436-N) DOI: 10.1101/gr.187101(Journal) ========================================================== Created: 2021-11-18 13:45:45 ConfID: 6366439 CauseID: 1512994591 OtherID: 4371 JT: Genome Research MD: Bamshad,11,6,994,2001,Genetic Evidence on the Origins of Indian Caste Populations DOI: 10.1101/gr.GR-1733RR(Journal) (6366439-N) DOI: 10.1101/gr.173301(Journal) ========================================================== Created: 2021-11-18 13:45:45 ConfID: 6366438 CauseID: 1512994591 OtherID: 4371 JT: Genome Research MD: Rocha,11,6,946,2001,Evolutionary Role of Restriction/Modification Systems as Revealed by Comparative Genome Analysis DOI: 10.1101/gr.GR-1531RR(Journal) (6366438-N) DOI: 10.1101/gr.153101(Journal) ========================================================== Created: 2021-11-18 13:45:45 ConfID: 6366441 CauseID: 1512994591 OtherID: 4371 JT: Genome Research MD: Collins,11,6,1034,2001,Comprehensive Genome Sequence Analysis of a Breast Cancer Amplicon DOI: 10.1101/gr.GR1743R(Journal) (6366441-N) DOI: 10.1101/gr.174301(Journal) ========================================================== Created: 2021-11-18 13:45:51 ConfID: 6366440 CauseID: 1512994598 OtherID: 4371 JT: Genome Research MD: Dean,11,7,1156,2001,The Human ATP-Binding Cassette (ABC) Transporter Superfamily DOI: 10.1101/gr.GR-1649R(Journal) (6366440-N) DOI: 10.1101/gr.184901(Journal) ========================================================== Created: 2021-11-18 13:45:51 ConfID: 6366443 CauseID: 1512994598 OtherID: 4371 JT: Genome Research MD: Maddox,11,7,1275,2001,An Enhanced Linkage Map of the Sheep Genome Comprising More Than 1000 Loci DOI: 10.1101/gr.GR-1350R(Journal) (6366443-N) DOI: 10.1101/gr.135001(Journal) ========================================================== Created: 2021-11-18 13:46:08 ConfID: 6366442 CauseID: 1512994620 OtherID: 4368 JT: Genome Research MD: Hegyi,11,10,1632,2001,Annotation Transfer for Genomics: Measuring Functional Divergence in Multi-Domain Proteins DOI: 10.1101/gr. 183801(Journal) (6366442-N) DOI: 10.1101/gr.183801(Journal) ========================================================== Created: 2021-11-18 13:46:35 ConfID: 6366445 CauseID: 1512994657 OtherID: 6571267 JT: Genome Research MD: Eaves,12,2,232,2002,Combining Mouse Congenic Strains and Microarray Gene Expression Analyses to Study a Complex Trait: The NOD Model of Type 1 Diabetes DOI: 10.1101/gr.214102. Article published online before print in January 2002(Journal) (6366445-N) DOI: 10.1101/gr.214102(Journal) ========================================================== Created: 2021-11-18 13:45:51 ConfID: 6366444 CauseID: 1512994598 OtherID: 4371 JT: Genome Research MD: Zarrinkar,11,7,1256,2001,Arrays of Arrays for High-Throughput Gene Expression Profiling DOI: 10.1101/gr.GR-1748R(Journal) (6366444-N) DOI: 10.1101/gr.174801(Journal) ========================================================== Created: 2021-11-18 13:46:35 ConfID: 6366447 CauseID: 1512994657 OtherID: 6571267 JT: Genome Research MD: Rajewsky,12,2,298,2002,The Evolution of DNA Regulatory Regions for Proteo-Gamma Bacteria by Interspecies Comparisons DOI: 10.1101/gr.207502. Article published online before print in January 2002(Journal) (6366447-N) DOI: 10.1101/gr.207502(Journal) ========================================================== Created: 2021-11-18 13:46:35 ConfID: 6366446 CauseID: 1512994657 OtherID: 6571267 JT: Genome Research MD: Frisch,12,2,349,2002,In Silico Prediction of Scaffold/Matrix Attachment Regions in Large Genomic Sequences DOI: 10.1101/gr.206602. Article published online before print in January 2002(Journal) (6366446-N) DOI: 10.1101/gr.206602(Journal) ========================================================== Created: 2021-11-18 13:46:40 ConfID: 6366449 CauseID: 1512994663 OtherID: 6571267 JT: Genome Research MD: Semple,12,3,424,2002,Computational Comparison of Human Genomic Sequence Assemblies for a Region of Chromosome 4 DOI: 10.1101/gr.207902. Article published online before print in February 2002(Journal) (6366449-N) DOI: 10.1101/gr.207902(Journal) ========================================================== Created: 2021-11-18 13:46:40 ConfID: 6366448 CauseID: 1512994663 OtherID: 6571267 JT: Genome Research MD: Xu,12,3,482,2002,High-Density Cell Microarrays for Parallel Functional Determinations DOI: 10.1101/gr.213002. Article published online before print in February 2002(Journal) (6366448-N) DOI: 10.1101/gr.213002(Journal) ========================================================== Created: 2021-11-18 13:47:03 ConfID: 6366451 CauseID: 1512994686 OtherID: 6571267 JT: Genome Research MD: Woischnik,12,6,885,2002,Pattern of Organization of Human Mitochondrial Pseudogenes in the Nuclear Genome DOI: 10.1101/gr.227202. Article published online before print in May 2002(Journal) (6366451-N) DOI: 10.1101/gr.227202(Journal) ========================================================== Created: 2021-11-18 13:47:03 ConfID: 6366450 CauseID: 1512994686 OtherID: 6571267 JT: Genome Research MD: Jordan,12,6,962,2002,Essential Genes Are More Evolutionarily Conserved Than Are Nonessential Genes in Bacteria DOI: 10.1101/gr.87702. Article published online before print in May 2002(Journal) (6366450-N) DOI: 10.1101/gr.87702(Journal) ========================================================== Created: 2021-11-18 13:47:03 ConfID: 6366453 CauseID: 1512994686 OtherID: 6571267 JT: Genome Research MD: Khabar,12,6,985,2002,An Integrated Computational and Laboratory Approach for Selective Amplification of mRNAs Containing the Adenylate Uridylate-Rich Element Consensus Sequence DOI: 10.1101/gr.204902. Article published online before print in May 2002(Journal) (6366453-N) DOI: 10.1101/gr.204902(Journal) ========================================================== Created: 2021-11-18 13:46:51 ConfID: 6366452 CauseID: 1512994672 OtherID: 6571267 JT: Genome Research MD: Strichman-Almashanu,12,4,543,2002,A Genome-Wide Screen for Normally Methylated Human CpG Islands That Can Identify Novel Imprinted Genes DOI: 10.1101/gr.224102. Article published online before print in March 2002(Journal) (6366452-N) DOI: 10.1101/gr.224102(Journal) ========================================================== Created: 2021-11-18 13:47:08 ConfID: 6366455 CauseID: 1512994692 OtherID: 6571267 JT: Genome Research MD: Osato,12,7,1127,2002,A Computer-Based Method of Selecting Clones for a Full-Length cDNA Project: Simultaneous Collection of Negligibly Redundant and Variant cDNAs DOI: 10.1101/gr.75202. Article published online before print in June 2002(Journal) (6366455-N) DOI: 10.1101/gr.75202(Journal) ========================================================== Created: 2021-11-18 13:46:40 ConfID: 6366454 CauseID: 1512994663 OtherID: 6571267 JT: Genome Research MD: Doi,12,3,487,2002,Novel Fluorescence Labeling and High-Throughput Assay Technologies for In Vitro Analysis of Protein Interactions DOI: 10.1101/gr.218802. Article published online before print in February 2002(Journal) (6366454-N) DOI: 10.1101/gr.218802(Journal) ========================================================== Created: 2021-11-18 13:47:08 ConfID: 6366457 CauseID: 1512994692 OtherID: 6571267 JT: Genome Research MD: Chen,12,7,1106,2002,Single Nucleotide Polymorphism Mapping Using Genome-Wide Unique Sequences DOI: 10.1101/gr.224502. Article published online before print in June 2002(Journal) (6366457-N) DOI: 10.1101/gr.224502(Journal) ========================================================== Created: 2021-11-18 13:47:03 ConfID: 6366456 CauseID: 1512994686 OtherID: 6571267 JT: Genome Research MD: Kent,12,6,996,2002,The Human Genome Browser at UCSC DOI: 10.1101/gr.229102. Article published online before print in May 2002(Journal) (6366456-N) DOI: 10.1101/gr.229102(Journal) ========================================================== Created: 2021-11-18 13:47:03 ConfID: 6366459 CauseID: 1512994686 OtherID: 6571267 JT: Genome Research MD: Brown,12,6,868,2002,Multiplex Three-Dimensional Brain Gene Expression Mapping in a Mouse Model of Parkinson's Disease DOI: 10.1101/gr.229002. Article published online before print in May 2002(Journal) (6366459-N) DOI: 10.1101/gr.229002(Journal) ========================================================== Created: 2021-11-18 13:46:40 ConfID: 6366458 CauseID: 1512994663 OtherID: 6571267 JT: Genome Research MD: Guo,12,3,447,2002,Oligonucleotide Arrays for High-Throughput SNPs Detection in the MHC Class I Genes: HLA-B as a Model System DOI: 10.1101/gr.206402. Article published online before print in February 2002(Journal) (6366458-N) DOI: 10.1101/gr.206402(Journal) ========================================================== Created: 2021-11-18 13:47:23 ConfID: 6366461 CauseID: 1512994709 OtherID: 555870 JT: Genome Research MD: Elso,12,9,1428,2002,Mutation Detection Using Mass Spectrometric Separation of Tiny Oligonucleotide Fragments DOI: 10.1101/gr.GR-1578R(Journal) (6366461-N) DOI: 10.1101/gr.157802(Journal) ========================================================== Created: 2021-11-18 13:46:40 ConfID: 6366460 CauseID: 1512994663 OtherID: 6571267 JT: Genome Research MD: Kawaji,12,3,367,2002,Exploration of Novel Motifs Derived from Mouse cDNA Sequences DOI: 10.1101/gr.193702. Article published online before print in February 2002(Journal) (6366460-N) DOI: 10.1101/gr.193702(Journal) ========================================================== Created: 2021-11-18 14:04:55 ConfID: 6366463 CauseID: 1512996203 OtherID: 729491350 JT: Genome Research MD: Wen,18,11,1806,2008,Overlapping euchromatin/heterochromatin- associated marks are enriched in imprinted gene regions and predict allele-specific modification DOI: 10.1101/gr.067587.107(Journal) (6366463-N) DOI: 10.1101/gr.067587.108(Journal) ========================================================== Created: 2021-11-18 14:00:08 ConfID: 6366462 CauseID: 1512995665 OtherID: 142556803 JT: Genome Research MD: Wicker,15,1,126,2005,The repetitive landscape of the chicken genome DOI: 10.1101/gr.2438004(Journal) (6366462-N) DOI: 10.1101/gr.2438005(Journal) ========================================================== Created: 2019-03-01 14:50:34 ConfID: 5456499 CauseID: 1440319144 OtherID: 4371 JT: Genome Research MD: Wolf,11,3,356,2001,Genome Alignment, Evolution of Prokaryotic Genome Organization, and Prediction of Gene Function Using Genomic Context DOI: 10.1101/gr.GR-1619R(Journal) (5456499-N) DOI: 10.1101/gr.161901(Journal) ========================================================== Created: 2019-03-01 14:51:23 ConfID: 5456502 CauseID: 1440319381 OtherID: 4371 JT: Genome Research MD: Scheetz,11,3,497,2001,Generation of a High-Density Rat EST Map DOI: 10.1101/gr.GR-1516R(Journal) (5456502-N) DOI: 10.1101/gr.151601(Journal) ========================================================== Created: 2019-03-01 14:51:08 ConfID: 5456501 CauseID: 1440319380 OtherID: 4371 JT: Genome Research MD: Lo,11,3,448,2001,A Novel Chromatin Immunoprecipitation and Array (CIA) Analysis Identifies a 460-kb CENP-A-Binding Neocentromere DNA DOI: 10.1101/gr.GR-1676R(Journal) (5456501-N) DOI: 10.1101/gr.167601(Journal) ========================================================== Created: 2021-11-18 13:45:09 ConfID: 6366407 CauseID: 1512994522 OtherID: 4371 JT: Genome Research MD: Woods,10,12,1903,2000,A Comparative Map of the Zebrafish Genome DOI: 10.1101/gr.10.12.1903(Journal) (6366407-N) DOI: 10.1101/gr.164600(Journal) ========================================================== Created: 2019-03-01 14:50:52 ConfID: 5456500 CauseID: 1440319145 OtherID: 4371 JT: Genome Research MD: Wiemann,11,3,422,2001,Toward a Catalog of Human Genes and Proteins: Sequencing and Analysis of 500 Novel Complete Protein Coding Human cDNAs DOI: 10.1101/gr.GR1547R(Journal) (5456500-N) DOI: 10.1101/gr.154701(Journal) ========================================================== Created: 2021-11-18 13:45:09 ConfID: 6366409 CauseID: 1512994522 OtherID: 4371 JT: Genome Research MD: Del Punta,10,12,1958,2000,Sequence Diversity and Genomic Organization of Vomeronasal Receptor Genes in the Mouse DOI: 10.1101/gr.10.12.1958(Journal) (6366409-N) DOI: 10.1101/gr.140600(Journal) ========================================================== Created: 2021-11-18 13:45:09 ConfID: 6366408 CauseID: 1512994522 OtherID: 4371 JT: Genome Research MD: Callow,10,12,2022,2000,Microarray Expression Profiling Identifies Genes with Altered Expression in HDL-Deficient Mice DOI: 10.1101/gr.10.12.2022(Journal) (6366408-N) DOI: 10.1101/gr.147200(Journal) ========================================================== Created: 2021-11-18 13:45:16 ConfID: 6366411 CauseID: 1512994546 OtherID: 4371 JT: Genome Research MD: Palzkill,11,1,1,2001,Impending Doom: Antibiotic Exposure and Bacterial Gene Expression DOI: 10.1101/gr.11.1.1(Journal) (6366411-N) DOI: 10.1101/gr.170901(Journal) ========================================================== Created: 2021-11-18 13:45:09 ConfID: 6366410 CauseID: 1512994522 OtherID: 4371 JT: Genome Research MD: Stekel,10,12,2055,2000,The Comparison of Gene Expression from Multiple cDNA Libraries DOI: 10.1101/gr.GR-1325RR(Journal) (6366410-N) DOI: 10.1101/gr.132500(Journal) ========================================================== Created: 2021-11-18 13:45:09 ConfID: 6366413 CauseID: 1512994522 OtherID: 4371 JT: Genome Research MD: Giorgi,10,12,1979,2000,Characterization of Nonfunctional V1R-like Pheromone Receptor Sequences in Human DOI: 10.1101/gr.10.12.1979(Journal) (6366413-N) DOI: 10.1101/gr.146700(Journal) ========================================================== Created: 2021-11-18 13:45:09 ConfID: 6366412 CauseID: 1512994522 OtherID: 4371 JT: Genome Research MD: Salamon,10,12,2044,2000,Detection of Deleted Genomic DNA Using a Semiautomated Computational Analysis of GeneChip Data DOI: 10.1101/gr.GR-1529R(Journal) (6366412-N) DOI: 10.1101/gr.152900(Journal) ========================================================== Created: 2021-11-18 13:45:22 ConfID: 6366415 CauseID: 1512994553 OtherID: 4371 JT: Genome Research MD: Konno,11,2,281,2001,Computer-Based Methods for the Mouse Full-Length cDNA Encyclopedia: Real-Time Sequence Clustering for Construction of a Nonredundant cDNA Library DOI: 10.1101/gr.GR-1457R(Journal) (6366415-N) DOI: 10.1101/gr.145701(Journal) ========================================================== Created: 2021-11-18 13:45:09 ConfID: 6366414 CauseID: 1512994522 OtherID: 4371 JT: Genome Research MD: Ton,10,12,1915,2000,Identification, Characterization, and Mapping of Expressed Sequence Tags from an Embryonic Zebrafish Heart cDNA Library DOI: 10.1101/gr.10.12.1915(Journal) (6366414-N) DOI: 10.1101/gr.154000(Journal) ========================================================== Created: 2021-11-18 13:45:09 ConfID: 6366417 CauseID: 1512994522 OtherID: 4371 JT: Genome Research MD: Nekrutenko,10,12,1986,2000,Assessment of Compositional Heterogeneity Within and Between Eukaryotic Genomes DOI: 10.1101/gr.10.12.1986(Journal) (6366417-N) DOI: 10.1101/gr.153400(Journal) ========================================================== Created: 2021-11-18 13:45:22 ConfID: 6366416 CauseID: 1512994553 OtherID: 4371 JT: Genome Research MD: Wendl,11,2,274,2001,Theories and Applications for Sequencing Randomly Selected Clones DOI: 10.1101/gr.GR-1339R(Journal) (6366416-N) DOI: 10.1101/gr.133901(Journal) ========================================================== Created: 2021-11-18 13:45:16 ConfID: 6366419 CauseID: 1512994546 OtherID: 4371 JT: Genome Research MD: Ronaghi,11,1,3,2001,Pyrosequencing Sheds Light on DNA Sequencing DOI: 10.1101/gr.11.1.3(Journal) (6366419-N) DOI: 10.1101/gr.150601(Journal) ========================================================== Created: 2021-11-18 13:45:09 ConfID: 6366418 CauseID: 1512994522 OtherID: 4371 JT: Genome Research MD: Ehlers,10,12,1968,2000,MHC-Linked Olfactory Receptor Loci Exhibit Polymorphism and Contribute to Extended HLA/OR-Haplotypes DOI: 10.1101/gr.10.12.1968(Journal) (6366418-N) DOI: 10.1101/gr.120400(Journal) ========================================================== Created: 2021-11-18 13:45:27 ConfID: 6366421 CauseID: 1512994559 OtherID: 4371 JT: Genome Research MD: Nakane,11,3,441,2001,A Method For Parallel, Automated, Thermal Cycling of Submicroliter Samples DOI: 10.1101/gr.GR1644R(Journal) (6366421-N) DOI: 10.1101/gr.164401(Journal) ========================================================== Created: 2021-11-18 13:45:09 ConfID: 6366420 CauseID: 1512994522 OtherID: 4371 JT: Genome Research MD: Abdrakhmanov,10,12,2062,2000,A Large Database of Chicken Bursal ESTs as a Resource for the Analysis of Vertebrate Gene Function DOI: 10.1101/gr.10.12.2062(Journal) (6366420-N) DOI: 10.1101/gr.1137900(Journal) ========================================================== Created: 2021-11-18 13:45:39 ConfID: 6366423 CauseID: 1512994575 OtherID: 1339351606 JT: Genome Research MD: Collins,11,5,641,2001,Contemplating the End of the Beginning DOI: 10.1101/gr.189801(Journal) (6366423-N) DOI: 10.1101/gr.1898(Journal) ========================================================== Created: 2021-11-18 13:45:09 ConfID: 6366422 CauseID: 1512994522 OtherID: 4371 JT: Genome Research MD: Chrast,10,12,2006,2000,The Mouse Brain Transcriptome by SAGE: Differences in Gene Expression between P30 Brains of the Partial Trisomy 16 Mouse Model of Down Syndrome (Ts65Dn) and Normals DOI: 10.1101/gr.10.12.2006(Journal) (6366422-N) DOI: 10.1101/gr.158500(Journal) ========================================================== Created: 2021-11-18 13:45:09 ConfID: 6366425 CauseID: 1512994522 OtherID: 4371 JT: Genome Research MD: Irving,10,12,1845,2000,Phylogeny of the Serpin Superfamily: Implications of Patterns of Amino Acid Conservation for Structure and Function DOI: 10.1101/gr.GR-1478R(Journal) (6366425-N) DOI: 10.1101/gr.147800(Journal) ========================================================== Created: 2021-11-18 13:45:33 ConfID: 6366424 CauseID: 1512994566 OtherID: 4371 JT: Genome Research MD: Hungs,11,4,531,2001,Identification and Functional Analysis of Mutations in the Hypocretin (Orexin) Genes of Narcoleptic Canines DOI: 10.1101/gr.GR-1610R(Journal) (6366424-N) DOI: 10.1101/gr.161001(Journal) ========================================================== Created: 2021-11-18 13:45:33 ConfID: 6366429 CauseID: 1512994566 OtherID: 4371 JT: Genome Research MD: Beaudet,11,4,600,2001,Homogeneous Assays for Single-Nucleotide Polymorphism Typing Using AlphaScreen DOI: 10.1101/gr.172501(Journal) (6366429-N) DOI: 10.1101/gr.1725501(Journal) ========================================================== Created: 2021-11-18 13:45:33 ConfID: 6366428 CauseID: 1512994566 OtherID: 4371 JT: Genome Research MD: Jordan,11,4,555,2001,Lineage-Specific Gene Expansions in Bacterial and Archaeal Genomes DOI: 10.1101/gr.GR-1660R(Journal) (6366428-N) DOI: 10.1101/gr.166001(Journal) ========================================================== Created: 2021-11-18 13:45:39 ConfID: 6366431 CauseID: 1512994575 OtherID: 1339351606 JT: Genome Research MD: Schwartz,11,5,703,2001,Whole Proteome pI Values Correlate with Subcellular Localizations of Proteins for Organisms within the Three Domains of Life DOI: 10.1101/gr.GR-1587R(Journal) (6366431-N) DOI: 10.1101/gr.158701(Journal) ========================================================== Created: 2021-11-18 13:45:45 ConfID: 6366430 CauseID: 1512994591 OtherID: 4371 JT: Genome Research MD: Lecompte,11,6,981,2001,Genome Evolution at the Genus Level: Comparison of Three Complete Genomes of Hyperthermophilic Archaea DOI: 10.1101/gr.GR1653R(Journal) (6366430-N) DOI: 10.1101/gr.165301(Journal)